Package: enviPick 1.7
Martin Loos
enviPick: Peak Picking for High Resolution Mass Spectrometry Data
Sequential partitioning, clustering and peak detection of centroided LC-MS mass spectrometry data (.mzXML). Interactive result and raw data plot.
Authors:
enviPick_1.7.tar.gz
enviPick_1.7.zip(r-4.5)enviPick_1.7.zip(r-4.4)enviPick_1.7.zip(r-4.3)
enviPick_1.7.tgz(r-4.4-x86_64)enviPick_1.7.tgz(r-4.4-arm64)enviPick_1.7.tgz(r-4.3-x86_64)enviPick_1.7.tgz(r-4.3-arm64)
enviPick_1.7.tar.gz(r-4.5-noble)enviPick_1.7.tar.gz(r-4.4-noble)
enviPick_1.7.tgz(r-4.4-emscripten)enviPick_1.7.tgz(r-4.3-emscripten)
enviPick.pdf |enviPick.html✨
enviPick/json (API)
NEWS
# Install 'enviPick' in R: |
install.packages('enviPick', repos = c('https://rickhelmus.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/blosloos/envipick/issues
Last updated 2 years agofrom:d346b23b1f. Checks:OK: 1 WARNING: 8. Indexed: no.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 09 2024 |
R-4.5-win-x86_64 | WARNING | Nov 09 2024 |
R-4.5-linux-x86_64 | WARNING | Nov 09 2024 |
R-4.4-win-x86_64 | WARNING | Nov 09 2024 |
R-4.4-mac-x86_64 | WARNING | Nov 09 2024 |
R-4.4-mac-aarch64 | WARNING | Nov 09 2024 |
R-4.3-win-x86_64 | WARNING | Nov 09 2024 |
R-4.3-mac-x86_64 | WARNING | Nov 09 2024 |
R-4.3-mac-aarch64 | WARNING | Nov 09 2024 |
Exports:enviPickbatchenviPickwrapmzagglommzclustmzpartmzpickplotMSlistreadMSdatawebpickwritePeaklist
Dependencies:base64encbslibcachemclicommonmarkcrayondigestfastmapfontawesomefsgluehtmltoolshttpuvjquerylibjsonlitelaterlifecyclemagrittrmemoisemimepromisesR6rappdirsRcppreadMzXmlDatarlangsassshinysourcetoolswithrXMLxtable
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Peak picking for high resolution liquid chromatography - mass spectrometry (LC-HRMS) data | enviPick-package enviPick |
Batch peak picking for several .mzXML input files | enviPickbatch |
Peak detection for LC-HRMS .mzML and .mzXML data | enviPickwrap |
Agglomerative partitioning of raw LC-HRMS measurements | mzagglom |
EIC-clustering of LC-HRMS data. | mzclust |
Divisive partitioning of raw LC-HRMS measurements | mzpart |
EIC peak picking | mzpick |
Interactive raw data and result viewer | plotMSlist |
Read LC-HRMS measurement .mzXML data | readMSdata |
enviPick web browser UI | webpick |
Export a .csv peak table from an MSlist object | writePeaklist |