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  "Title": "Mass Spectrometry Metabolomics Feature Clustering and\nInterpretation",
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  "Description": "A feature clustering algorithm for non-targeted mass\nspectrometric metabolomics data. This method is compatible with\ngas and liquid chromatography coupled mass spectrometry,\nincluding indiscriminant tandem mass spectrometry data.\nInitially described by Broeckling et all (2014)\n<DOI:10.1021/ac501530d>.",
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    "compute_do.sets",
    "compute_SpecAbundAve",
    "compute_wt_mean",
    "create_ramclustObj",
    "define_samples",
    "defineExperiment",
    "do.findmain",
    "exportDataset",
    "filter_blanks",
    "filter_good_features",
    "filter_signal",
    "find_good_features",
    "findfeature",
    "findmass",
    "get_ExpDes",
    "get_instrument_platform",
    "getData",
    "getSampleMetadata",
    "mean_signal_intensities",
    "mergeRCobjects",
    "ramclustR",
    "rc.calibrate.ri",
    "rc.cmpd.filter.blanks",
    "rc.cmpd.filter.cv",
    "rc.cmpd.replace.na",
    "rc.expand.sample.names",
    "rc.export.msp.rc",
    "rc.feature.filter.blanks",
    "rc.feature.filter.cv",
    "rc.feature.normalize.batch.qc",
    "rc.feature.normalize.qc",
    "rc.feature.normalize.quantile",
    "rc.feature.normalize.tic",
    "rc.feature.replace.na",
    "rc.feature.replace.na.mai",
    "rc.get.csv.data",
    "rc.get.df.data",
    "rc.get.xcms.data",
    "rc.merge.split.clusters",
    "rc.qc",
    "rc.ramclustr",
    "rc.remove.qc",
    "rc.restore.qc.samples",
    "RCQC.plots",
    "remove_blanks",
    "replace_na",
    "write_csv",
    "write.gcei.mat",
    "write.methods",
    "write.msp"
  ],
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      "page": "add_params",
      "title": "add_params",
      "topics": [
        "add_params"
      ]
    },
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      "page": "check_arguments_filter.blanks",
      "title": "check_arguments_filter.blanks",
      "topics": [
        "check_arguments_filter.blanks"
      ]
    },
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      "page": "check_arguments_filter.cv",
      "title": "check_arguments_filter.cv",
      "topics": [
        "check_arguments_filter.cv"
      ]
    },
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      "page": "check_arguments_replace.na",
      "title": "check_arguments_replace.na",
      "topics": [
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      ]
    },
    {
      "page": "checks",
      "title": "checks",
      "topics": [
        "checks"
      ]
    },
    {
      "page": "compute_do.sets",
      "title": "compute_do.sets",
      "topics": [
        "compute_do.sets"
      ]
    },
    {
      "page": "compute_SpecAbundAve",
      "title": "compute_SpecAbundAve",
      "topics": [
        "compute_SpecAbundAve"
      ]
    },
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      "page": "compute_wt_mean",
      "title": "compute_wt_mean",
      "topics": [
        "compute_wt_mean"
      ]
    },
    {
      "page": "create_ramclustObj",
      "title": "create_ramclustObj",
      "topics": [
        "create_ramclustObj"
      ]
    },
    {
      "page": "define_samples",
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      "topics": [
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    },
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      "title": "defineExperiment",
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        "clustering",
        "feature",
        "mass spectrometry",
        "metabolomics",
        "ramlclustR",
        "xcms"
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      "title": "do.findmain",
      "concept": [
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        "feature",
        "findMain",
        "interpretMSSpectrum",
        "mass spectrometry",
        "metabolomics",
        "ramclustR",
        "xcms"
      ],
      "topics": [
        "do.findmain"
      ]
    },
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      "title": "exportDataset",
      "concept": [
        "RAMClustR",
        "ramclustR"
      ],
      "topics": [
        "exportDataset"
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      "title": "filter_good_features",
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      "title": "filter_signal",
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      "title": "find_good_features",
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    },
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      "title": "findfeature",
      "concept": [
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        "RAMClustR",
        "clustering",
        "feature",
        "mass spectrometry",
        "metabolomics",
        "ramclustR",
        "xcms"
      ],
      "topics": [
        "findfeature"
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    },
    {
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      "title": "findmass",
      "concept": [
        "MSFinder",
        "RAMClustR",
        "clustering",
        "feature",
        "mass spectrometry",
        "metabolomics",
        "ramclustR",
        "xcms"
      ],
      "topics": [
        "findmass"
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    },
    {
      "page": "get_ExpDes",
      "title": "get_ExpDes",
      "topics": [
        "get_ExpDes"
      ]
    },
    {
      "page": "get_instrument_platform",
      "title": "get_instrument_platform",
      "topics": [
        "get_instrument_platform"
      ]
    },
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      "page": "getData",
      "title": "getData",
      "concept": [
        "RAMClustR"
      ],
      "topics": [
        "getData"
      ]
    },
    {
      "page": "getSampleMetadata",
      "title": "Extract Sample Metadata from an xcms Object",
      "concept": [
        "xcms"
      ],
      "topics": [
        "getSampleMetadata"
      ]
    },
    {
      "page": "mean_signal_intensities",
      "title": "mean_signal_intensities",
      "topics": [
        "mean_signal_intensities"
      ]
    },
    {
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      "title": "mergeRCobjects",
      "concept": [
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        "clustering",
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        "mass spectrometry",
        "metabolomics",
        "ramclustR"
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      "topics": [
        "mergeRCobjects"
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    },
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      "title": "normalized_data_batch_qc",
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        "normalized_data_batch_qc"
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    },
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      "title": "normalized_data_tic",
      "topics": [
        "normalized_data_tic"
      ]
    },
    {
      "page": "order_datasets",
      "title": "order_datasets",
      "topics": [
        "order_datasets"
      ]
    },
    {
      "page": "ramclustR",
      "title": "ramclustR",
      "concept": [
        "MSFinder",
        "RAMClustR",
        "clustering",
        "feature",
        "mass spectrometry",
        "metabolomics",
        "ramclustR",
        "xcms"
      ],
      "topics": [
        "ramclustR"
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    },
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      "title": "rc.calibrate.ri",
      "concept": [
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        "RAMClustR",
        "clustering",
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        "mass spectrometry",
        "metabolomics",
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        "xcms"
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      "topics": [
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        "mass spectrometry",
        "metabolomics",
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        "xcms"
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      "topics": [
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    },
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      "title": "rc.cmpd.filter.cv",
      "concept": [
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        "clustering",
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        "mass spectrometry",
        "metabolomics",
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      "topics": [
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      "title": "rc.cmpd.replace.na",
      "concept": [
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        "RAMClustR",
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        "mass spectrometry",
        "metabolomics",
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      "topics": [
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    },
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      "title": "rc.expand.sample.names",
      "concept": [
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        "clustering",
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        "mass spectrometry",
        "metabolomics",
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      "topics": [
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      "title": "rc.export.msp.rc",
      "concept": [
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        "mass spectrometry",
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        "mass spectrometry",
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      "title": "rc.feature.filter.cv",
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        "clustering",
        "feature",
        "mass spectrometry",
        "metabolomics",
        "ramclustR",
        "xcms"
      ],
      "topics": [
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    },
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      "title": "rc.feature.normalize.batch.qc",
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        "rc.feature.normalize.batch.qc"
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    },
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