Package: RSirius 6.5.4

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RSirius: R Package Client for SIRIUS Nightsky API

REST API that provides the full functionality of SIRIUS and its web services as background service. It is intended as entry-point for scripting languages and software integration SDKs.This API is exposed by SIRIUS 6

Authors:person

RSirius_6.5.4.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RSirius/json (API)

# Install 'RSirius' in R:
install.packages('RSirius', repos = c('https://rickhelmus.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/git_user_id/git_repo_id/issues

On CRAN:

Conda:

5.48 score 25 stars 1 packages 111 exports 17 dependencies

Last updated from:496dd29092. Checks:7 ERROR, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
linux-develERROR196
source / vignettesOK253
linux-releaseERROR182
macos-releaseERROR119
macos-oldrelERROR140
windows-develERROR164
windows-releaseERROR155
windows-oldrelERROR164
wasm-releaseOK119

Exports:AccountCredentialsAccountInfoActuatorApiAlignedFeatureAllowedFeaturesAnnotatedMsMsDataAnnotatedPeakAnnotatedSpectrumAnyValueApiClientApiResponseBackgroundComputationsStateEventBasicSpectrumBinaryFingerprintBioTransformerParametersBioTransformerSequenceStepCanopusCanopusPredictionCompoundCompoundClassCompoundClassesCompoundImportCompoundsApiComputedSubtoolsConnectionCheckConnectionErrorConsensusAnnotationsCSIConsensusAnnotationsDeNovoDataImportEventDBLinkDeviationFeatureFeatureAnnotationsFeatureImportFeaturesApiFingerprintPredictionFormulaCandidateFragmentationTreeFragmentNodeGuiApiGuiInfoHelperImportResultInfoInfoApiIsotopePatternAnnotationJobJobProgressJobsApiJobSubmissionLcmsSubmissionParametersLicenseInfoLipidAnnotationLoginAndAccountApiLossEdgeMsDataMsNovelistPagedModelAlignedFeaturePagedModelCompoundPagedModelFeaturePagedModelFormulaCandidatePagedModelJobPagedModelRunPagedModelSpectralLibraryMatchPagedModelStructureCandidateFormulaPagedModelStructureCandidateScoredPageMetadataParentPeakPeakAnnotationPeakPairProblemDetailProjectChangeEventProjectInfoProjectsApiQuantTableQuantTableOptFieldrsirius_apiRunRunOptFieldRunsApiSearchableDatabaseSearchableDatabaseParametersSearchableDatabasesApiSearchableFieldSearchableFieldTypeSecurityContextSecurityContextPrincipalSimplePeakSiriusSiriusSDKSpectralLibraryMatchSpectralLibraryMatchSummarySpectralLibrarySearchSpectrumAnnotationStoredJobSubmissionStructureCandidateStructureCandidateFormulaStructureCandidateScoredStructureDbSearchSubscriptionSubscriptionConsumablesTagTermTimeoutUseHeuristicWebServerNamespaceZodiacZodiacAnalogueNodesZodiacEdgeFilterThresholdsZodiacEpochsZodiacLibraryScoring

Dependencies:askpassbase64encclicurlgluehttr2jsonlitelifecyclemagrittropensslR6rlangstringistringrsysvctrswithr

Readme and manuals

Help Manual

Help pageTopics
AccountCredentialsAccountCredentials
AccountInfoAccountInfo
Actuator operationsActuatorApi
AlignedFeatureAlignedFeature
AllowedFeaturesAllowedFeatures
AnnotatedMsMsDataAnnotatedMsMsData
AnnotatedPeakAnnotatedPeak
AnnotatedSpectrumAnnotatedSpectrum
AnyValueAnyValue
ApiClientApiClient
ApiResponseApiResponse
BackgroundComputationsStateEventBackgroundComputationsStateEvent
BasicSpectrumBasicSpectrum
BinaryFingerprintBinaryFingerprint
BioTransformerParametersBioTransformerParameters
BioTransformerSequenceStepBioTransformerSequenceStep
CanopusCanopus
CanopusPredictionCanopusPrediction
CompoundCompound
CompoundClassCompoundClass
CompoundClassesCompoundClasses
CompoundImportCompoundImport
Compounds operationsCompoundsApi
ComputedSubtoolsComputedSubtools
ConnectionCheckConnectionCheck
ConnectionErrorConnectionError
ConsensusAnnotationsCSIConsensusAnnotationsCSI
ConsensusAnnotationsDeNovoConsensusAnnotationsDeNovo
DataImportEventDataImportEvent
DBLinkDBLink
DeviationDeviation
FeatureFeature
FeatureAnnotationsFeatureAnnotations
FeatureImportFeatureImport
Features operationsFeaturesApi
FingerprintPredictionFingerprintPrediction
FormulaCandidateFormulaCandidate
FragmentationTreeFragmentationTree
FragmentNodeFragmentNode
Gui operationsGuiApi
GuiInfoGuiInfo
ImportResultImportResult
InfoInfo
Info operationsInfoApi
IsotopePatternAnnotationIsotopePatternAnnotation
JobJob
JobProgressJobProgress
Jobs operationsJobsApi
JobSubmissionJobSubmission
LcmsSubmissionParametersLcmsSubmissionParameters
LicenseInfoLicenseInfo
LipidAnnotationLipidAnnotation
LoginAndAccount operationsLoginAndAccountApi
LossEdgeLossEdge
MsDataMsData
MsNovelistMsNovelist
PagedModelAlignedFeaturePagedModelAlignedFeature
PagedModelCompoundPagedModelCompound
PagedModelFeaturePagedModelFeature
PagedModelFormulaCandidatePagedModelFormulaCandidate
PagedModelJobPagedModelJob
PagedModelRunPagedModelRun
PagedModelSpectralLibraryMatchPagedModelSpectralLibraryMatch
PagedModelStructureCandidateFormulaPagedModelStructureCandidateFormula
PagedModelStructureCandidateScoredPagedModelStructureCandidateScored
PageMetadataPageMetadata
ParentPeakParentPeak
PeakAnnotationPeakAnnotation
PeakPairPeakPair
ProblemDetailProblemDetail
ProjectChangeEventProjectChangeEvent
ProjectInfoProjectInfo
Projects operationsProjectsApi
QuantTableQuantTable
QuantTableOptFieldQuantTableOptField
ApiClientrsirius_api
RunRun
RunOptFieldRunOptField
Runs operationsRunsApi
SearchableDatabaseSearchableDatabase
SearchableDatabaseParametersSearchableDatabaseParameters
SearchableDatabases operationsSearchableDatabasesApi
SearchableFieldSearchableField
SearchableFieldTypeSearchableFieldType
SecurityContextSecurityContext
SecurityContextPrincipalSecurityContextPrincipal
SimplePeakSimplePeak
SiriusSirius
SpectralLibraryMatchSpectralLibraryMatch
SpectralLibraryMatchSummarySpectralLibraryMatchSummary
SpectralLibrarySearchSpectralLibrarySearch
SpectrumAnnotationSpectrumAnnotation
StoredJobSubmissionStoredJobSubmission
StructureCandidateStructureCandidate
StructureCandidateFormulaStructureCandidateFormula
StructureCandidateScoredStructureCandidateScored
StructureDbSearchStructureDbSearch
SubscriptionSubscription
SubscriptionConsumablesSubscriptionConsumables
TagTag
TermTerm
TimeoutTimeout
UseHeuristicUseHeuristic
WebServerNamespaceWebServerNamespace
ZodiacZodiac
ZodiacAnalogueNodesZodiacAnalogueNodes
ZodiacEdgeFilterThresholdsZodiacEdgeFilterThresholds
ZodiacEpochsZodiacEpochs
ZodiacLibraryScoringZodiacLibraryScoring