Package: RAMClustR
Type: Package
Title: Mass Spectrometry Metabolomics Feature Clustering and
        Interpretation
Version: 1.3.4
Date: 2026-02-13
Authors@R: c(
    person("Corey D.", "Broeckling", , "Corey.Broeckling@ColoState.EDU", role = "cre",
           comment = c(ORCID = "0000-0002-6158-827X")),
    person("Fayyaz", "Afsar", role = "aut"),
    person("Steffen", "Neumann", role = "aut"),
    person("Asa", "Ben-Hur", role = "aut"),
    person("Jessica", "Prenni", role = "aut"),
    person("Helge", "Hecht", , "helge.hecht@recetox.muni.cz", role = "ctb",
           comment = c(ORCID = "0000-0001-6744-996X")),
    person("Matej", "Trojak", , "matej.trojak@recetox.muni.cz", role = "ctb"),
    person("Zargham", "Ahmad", , "zargham.ahmad@recetox.muni.cz", role = "ctb")
  )
Depends: R (>= 3.5.0)
Imports: dynamicTreeCut, fastcluster, jsonlite, e1071, gplots,
        pcaMethods, utils, ggplot2, methods, MAI
Suggests: knitr, rmarkdown, xcms, testthat, patrick, MSnbase,
        InterpretMSSpectrum (>= 1.3.8), BiocManager, xml2, stringi,
        readxl, curl, rentrez, MsExperiment
License: GPL-3
Description: A feature clustering algorithm for non-targeted mass
        spectrometric metabolomics data. This method is compatible with
        gas and liquid chromatography coupled mass spectrometry,
        including indiscriminant tandem mass spectrometry data.
        Initially described by Broeckling et all (2014)
        <DOI:10.1021/ac501530d>.
URL: https://github.com/cbroeckl/RAMClustR
Encoding: UTF-8
biocViews: MassSpectrometry, Metabolomics
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/pak/sysreqs: cmake libfontconfig1-dev libfreetype6-dev
        libfribidi-dev make libharfbuzz-dev libicu-dev libjpeg-dev
        libpng-dev libtiff-dev libuv1-dev libwebp-dev libxml2-dev
        libssl-dev libx11-dev zlib1g-dev
Repository: https://rickhelmus.r-universe.dev
Date/Publication: 2026-04-03 19:52:27 UTC
RemoteUrl: https://github.com/cbroeckl/RAMClustR
RemoteRef: HEAD
RemoteSha: 671f929d7bc1b49197661020ac226a224c6cddc7
NeedsCompilation: no
Packaged: 2026-10-16 09:32:27 UTC; root
Author: Corey D. Broeckling [cre] (ORCID:
    <https://orcid.org/0000-0002-6158-827X>),
  Fayyaz Afsar [aut],
  Steffen Neumann [aut],
  Asa Ben-Hur [aut],
  Jessica Prenni [aut],
  Helge Hecht [ctb] (ORCID: <https://orcid.org/0000-0001-6744-996X>),
  Matej Trojak [ctb],
  Zargham Ahmad [ctb]
Maintainer: Corey D. Broeckling <Corey.Broeckling@ColoState.EDU>