Package: KPIC 2.4.0

Hongchao Ji

KPIC: Mass Spectrometry-Based Metabolomics Using Pure Ion Chromatograms

KPIC2 is an effective platform for LC-MS based metabolomics using pure ion chromatograms, which is developed for metabolomics studies. KPIC2 can detect pure ions accurately, align PICs across samples, group PICs to annotate isotope and adduct PICs, fill missing peaks and pattern recognition. High-resolution mass spectrometers like TOF and Orbitrap are more suitable.

Authors:Hongchao Ji

KPIC_2.4.0.tar.gz
KPIC_2.4.0.zip(r-4.7-x86_64)KPIC_2.4.0.zip(r-4.7-arm64)KPIC_2.4.0.zip(r-4.6-x86_64)KPIC_2.4.0.zip(r-4.6-arm64)KPIC_2.4.0.zip(r-4.5-x86_64)
KPIC_2.4.0.tgz(r-4.6-x86_64)KPIC_2.4.0.tgz(r-4.6-arm64)KPIC_2.4.0.tgz(r-4.5-x86_64)KPIC_2.4.0.tgz(r-4.5-arm64)
KPIC_2.4.0.tar.gz(r-4.7-arm64)KPIC_2.4.0.tar.gz(r-4.7-x86_64)KPIC_2.4.0.tar.gz(r-4.6-arm64)KPIC_2.4.0.tar.gz(r-4.6-x86_64)
KPIC_2.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
KPIC/json (API)

# Install 'KPIC' in R:
install.packages('KPIC', repos = c('https://rickhelmus.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rickhelmus/kpic2/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

1.70 score 5 scripts 34 exports 113 dependencies

Last updated from:5f63805169. Checks:13 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING234
linux-devel-x86_64WARNING239
source / vignettesOK274
linux-release-arm64WARNING234
linux-release-x86_64WARNING247
macos-release-arm64WARNING269
macos-release-x86_64WARNING313
macos-oldrel-arm64WARNING222
macos-oldrel-x86_64WARNING506
windows-devel-arm64WARNING342
windows-devel-x86_64WARNING290
windows-release-arm64WARNING378
windows-release-x86_64WARNING293
windows-oldrel-x86_64WARNING283
wasm-releaseOK147

Exports:.PICfit.PICresolve.PICsplitanalyst.OPLSanalyst.RFfillPeaks.EIBPCgetDataMatrixgetMSgetPeaksgetPICgetPIC.kmeansgetPIPgetTICsgroupCombineLoadDataPICfitPICresolvePICsetPICset.alignPICset.fitPICset.getPeaksPICset.groupPICset.kmeansPICset.resolvePICset.splitPICsplitreadPICsviewAlignviewGroupsviewMSviewPICsviewPseudospecturmviewTICsWMPD

Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbiocmakebslibcachemcalibrateCkmeans.1d.dpclicodetoolscommonmarkcpp11crayoncrosstalkcurldata.tabledbscanDelayedArraydigestdir.expirydplyrevaluatefarverfastmapfilelockfontawesomeforeachfsGAgenericsGenomicRangesggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeMultiAssayExperimentMultiDataSetmzRncdf4opensslotelpillarpkgconfigplotlypromisesProtGenericspurrrqqmanR6randomForestrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRdpackRhdf5librlangrmarkdownroplsS4ArraysS4VectorsS7sassscalesSeqinfoshinysourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml