Package: KPIC 2.4.0

Hongchao Ji

KPIC: Mass Spectrometry-Based Metabolomics Using Pure Ion Chromatograms

KPIC2 is an effective platform for LC-MS based metabolomics using pure ion chromatograms, which is developed for metabolomics studies. KPIC2 can detect pure ions accurately, align PICs across samples, group PICs to annotate isotope and adduct PICs, fill missing peaks and pattern recognition. High-resolution mass spectrometers like TOF and Orbitrap are more suitable.

Authors:Hongchao Ji

KPIC_2.4.0.tar.gz
KPIC_2.4.0.zip(r-4.7)KPIC_2.4.0.zip(r-4.6)KPIC_2.4.0.zip(r-4.5)
KPIC_2.4.0.tgz(r-4.6-x86_64)KPIC_2.4.0.tgz(r-4.6-arm64)KPIC_2.4.0.tgz(r-4.5-x86_64)KPIC_2.4.0.tgz(r-4.5-arm64)
KPIC_2.4.0.tar.gz(r-4.7-arm64)KPIC_2.4.0.tar.gz(r-4.7-x86_64)KPIC_2.4.0.tar.gz(r-4.6-arm64)KPIC_2.4.0.tar.gz(r-4.6-x86_64)
KPIC_2.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
KPIC/json (API)

# Install 'KPIC' in R:
install.packages('KPIC', repos = c('https://rickhelmus.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rickhelmus/kpic2/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

1.70 score 3 scripts 34 exports 113 dependencies

Last updated from:5f63805169. Checks:11 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING298
linux-devel-x86_64WARNING351
source / vignettesOK324
linux-release-arm64WARNING284
linux-release-x86_64WARNING307
macos-release-arm64WARNING219
macos-release-x86_64WARNING338
macos-oldrel-arm64WARNING181
macos-oldrel-x86_64WARNING447
windows-develWARNING515
windows-releaseWARNING245
windows-oldrelWARNING246
wasm-releaseOK198

Exports:.PICfit.PICresolve.PICsplitanalyst.OPLSanalyst.RFfillPeaks.EIBPCgetDataMatrixgetMSgetPeaksgetPICgetPIC.kmeansgetPIPgetTICsgroupCombineLoadDataPICfitPICresolvePICsetPICset.alignPICset.fitPICset.getPeaksPICset.groupPICset.kmeansPICset.resolvePICset.splitPICsplitreadPICsviewAlignviewGroupsviewMSviewPICsviewPseudospecturmviewTICsWMPD

Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbiocmakebslibcachemcalibrateCkmeans.1d.dpclicodetoolscommonmarkcpp11crayoncrosstalkcurldata.tabledbscanDelayedArraydigestdir.expirydplyrevaluatefarverfastmapfilelockfontawesomeforeachfsGAgenericsGenomicRangesggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeMultiAssayExperimentMultiDataSetmzRncdf4opensslotelpillarpkgconfigplotlypromisesProtGenericspurrrqqmanR6randomForestrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRdpackRhdf5librlangrmarkdownroplsS4ArraysS4VectorsS7sassscalesSeqinfoshinysourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml