Package: KPIC 2.4.0

Hongchao Ji

KPIC: Mass Spectrometry-Based Metabolomics Using Pure Ion Chromatograms

KPIC2 is an effective platform for LC-MS based metabolomics using pure ion chromatograms, which is developed for metabolomics studies. KPIC2 can detect pure ions accurately, align PICs across samples, group PICs to annotate isotope and adduct PICs, fill missing peaks and pattern recognition. High-resolution mass spectrometers like TOF and Orbitrap are more suitable.

Authors:Hongchao Ji

KPIC_2.4.0.tar.gz
KPIC_2.4.0.zip(r-4.7)KPIC_2.4.0.zip(r-4.6)KPIC_2.4.0.zip(r-4.5)
KPIC_2.4.0.tgz(r-4.6-x86_64)KPIC_2.4.0.tgz(r-4.6-arm64)KPIC_2.4.0.tgz(r-4.5-x86_64)KPIC_2.4.0.tgz(r-4.5-arm64)
KPIC_2.4.0.tar.gz(r-4.7-arm64)KPIC_2.4.0.tar.gz(r-4.7-x86_64)KPIC_2.4.0.tar.gz(r-4.6-arm64)KPIC_2.4.0.tar.gz(r-4.6-x86_64)
KPIC_2.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
KPIC/json (API)

# Install 'KPIC' in R:
install.packages('KPIC', repos = c('https://rickhelmus.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rickhelmus/kpic2/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

1.70 score 3 scripts 34 exports 113 dependencies

Last updated from:5f63805169. Checks:11 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING298
linux-devel-x86_64WARNING342
source / vignettesOK259
linux-release-arm64WARNING312
linux-release-x86_64WARNING307
macos-release-arm64WARNING175
macos-release-x86_64WARNING449
macos-oldrel-arm64WARNING162
macos-oldrel-x86_64WARNING464
windows-develWARNING279
windows-releaseWARNING319
windows-oldrelWARNING249
wasm-releaseOK160

Exports:.PICfit.PICresolve.PICsplitanalyst.OPLSanalyst.RFfillPeaks.EIBPCgetDataMatrixgetMSgetPeaksgetPICgetPIC.kmeansgetPIPgetTICsgroupCombineLoadDataPICfitPICresolvePICsetPICset.alignPICset.fitPICset.getPeaksPICset.groupPICset.kmeansPICset.resolvePICset.splitPICsplitreadPICsviewAlignviewGroupsviewMSviewPICsviewPseudospecturmviewTICsWMPD

Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbiocmakebslibcachemcalibrateCkmeans.1d.dpclicodetoolscommonmarkcpp11crayoncrosstalkcurldata.tabledbscanDelayedArraydigestdir.expirydplyrevaluatefarverfastmapfilelockfontawesomeforeachfsGAgenericsGenomicRangesggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeMultiAssayExperimentMultiDataSetmzRncdf4opensslotelpillarpkgconfigplotlypromisesProtGenericspurrrqqmanR6randomForestrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRdpackRhdf5librlangrmarkdownroplsS4ArraysS4VectorsS7sassscalesSeqinfoshinysourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml