Package: KPIC 2.4.0

Hongchao Ji

KPIC: Mass Spectrometry-Based Metabolomics Using Pure Ion Chromatograms

KPIC2 is an effective platform for LC-MS based metabolomics using pure ion chromatograms, which is developed for metabolomics studies. KPIC2 can detect pure ions accurately, align PICs across samples, group PICs to annotate isotope and adduct PICs, fill missing peaks and pattern recognition. High-resolution mass spectrometers like TOF and Orbitrap are more suitable.

Authors:Hongchao Ji

KPIC_2.4.0.tar.gz
KPIC_2.4.0.zip(r-4.5)KPIC_2.4.0.zip(r-4.4)KPIC_2.4.0.zip(r-4.3)
KPIC_2.4.0.tgz(r-4.5-x86_64)KPIC_2.4.0.tgz(r-4.5-arm64)KPIC_2.4.0.tgz(r-4.4-x86_64)KPIC_2.4.0.tgz(r-4.4-arm64)
KPIC_2.4.0.tar.gz(r-4.5-noble)KPIC_2.4.0.tar.gz(r-4.4-noble)
KPIC_2.4.0.tgz(r-4.4-emscripten)KPIC_2.4.0.tgz(r-4.3-emscripten)
KPIC.pdf |KPIC.html✨
KPIC/json (API)

# Install 'KPIC' in R:
install.packages('KPIC', repos = c('https://rickhelmus.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rickhelmus/kpic2/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

cpp

1.70 score 3 scripts 34 exports 115 dependencies

Last updated 2 years agofrom:dd0dddb0ca. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 31 2025
R-4.5-win-x86_64WARNINGJan 31 2025
R-4.5-mac-x86_64WARNINGJan 31 2025
R-4.5-mac-aarch64WARNINGJan 31 2025
R-4.5-linux-x86_64WARNINGJan 31 2025
R-4.4-win-x86_64WARNINGJan 31 2025
R-4.4-mac-x86_64WARNINGJan 31 2025
R-4.4-mac-aarch64WARNINGJan 31 2025
R-4.3-win-x86_64WARNINGDec 02 2024

Exports:.PICfit.PICresolve.PICsplitanalyst.OPLSanalyst.RFfillPeaks.EIBPCgetDataMatrixgetMSgetPeaksgetPICgetPIC.kmeansgetPIPgetTICsgroupCombineLoadDataPICfitPICresolvePICsetPICset.alignPICset.fitPICset.getPeaksPICset.groupPICset.kmeansPICset.resolvePICset.splitPICsplitreadPICsviewAlignviewGroupsviewMSviewPICsviewPseudospecturmviewTICsWMPD

Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbslibcachemcalibrateCkmeans.1d.dpclicodetoolscolorspacecommonmarkcpp11crayoncrosstalkcurldata.tabledbscanDelayedArraydigestdplyrevaluatefansifarverfastmapfontawesomeforeachfsGAgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemgcvmimeMultiAssayExperimentMultiDataSetmunsellmzRncdf4nlmeopensslpillarpkgconfigplotlypromisesProtGenericspurrrqqmanR6randomForestrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRdpackRhdf5librlangrmarkdownroplsS4ArraysS4VectorssassscalesshinysourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunxtableXVectoryaml