Package: KPIC 2.4.0

Hongchao Ji

KPIC: Mass Spectrometry-Based Metabolomics Using Pure Ion Chromatograms

KPIC2 is an effective platform for LC-MS based metabolomics using pure ion chromatograms, which is developed for metabolomics studies. KPIC2 can detect pure ions accurately, align PICs across samples, group PICs to annotate isotope and adduct PICs, fill missing peaks and pattern recognition. High-resolution mass spectrometers like TOF and Orbitrap are more suitable.

Authors:Hongchao Ji

KPIC_2.4.0.tar.gz
KPIC_2.4.0.zip(r-4.7-x86_64)KPIC_2.4.0.zip(r-4.6-x86_64)KPIC_2.4.0.zip(r-4.5-x86_64)
KPIC_2.4.0.tgz(r-4.6-x86_64)KPIC_2.4.0.tgz(r-4.6-arm64)KPIC_2.4.0.tgz(r-4.5-x86_64)KPIC_2.4.0.tgz(r-4.5-arm64)
KPIC_2.4.0.tar.gz(r-4.7-arm64)KPIC_2.4.0.tar.gz(r-4.7-x86_64)KPIC_2.4.0.tar.gz(r-4.6-arm64)KPIC_2.4.0.tar.gz(r-4.6-x86_64)
KPIC_2.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
KPIC/json (API)

# Install 'KPIC' in R:
install.packages('KPIC', repos = c('https://rickhelmus.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rickhelmus/kpic2/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

1.70 score 3 scripts 34 exports 113 dependencies

Last updated from:5f63805169. Checks:11 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING246
linux-devel-x86_64WARNING301
source / vignettesOK260
linux-release-arm64WARNING258
linux-release-x86_64WARNING356
macos-release-arm64WARNING264
macos-release-x86_64WARNING372
macos-oldrel-arm64WARNING212
macos-oldrel-x86_64WARNING474
windows-devel-x86_64WARNING255
windows-release-x86_64WARNING284
windows-oldrel-x86_64WARNING278
wasm-releaseOK172

Exports:.PICfit.PICresolve.PICsplitanalyst.OPLSanalyst.RFfillPeaks.EIBPCgetDataMatrixgetMSgetPeaksgetPICgetPIC.kmeansgetPIPgetTICsgroupCombineLoadDataPICfitPICresolvePICsetPICset.alignPICset.fitPICset.getPeaksPICset.groupPICset.kmeansPICset.resolvePICset.splitPICsplitreadPICsviewAlignviewGroupsviewMSviewPICsviewPseudospecturmviewTICsWMPD

Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbiocmakebslibcachemcalibrateCkmeans.1d.dpclicodetoolscommonmarkcpp11crayoncrosstalkcurldata.tabledbscanDelayedArraydigestdir.expirydplyrevaluatefarverfastmapfilelockfontawesomeforeachfsGAgenericsGenomicRangesggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeMultiAssayExperimentMultiDataSetmzRncdf4opensslotelpillarpkgconfigplotlypromisesProtGenericspurrrqqmanR6randomForestrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRdpackRhdf5librlangrmarkdownroplsS4ArraysS4VectorsS7sassscalesSeqinfoshinysourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml