Package: KPIC 2.4.0

Hongchao Ji

KPIC: Mass Spectrometry-Based Metabolomics Using Pure Ion Chromatograms

KPIC2 is an effective platform for LC-MS based metabolomics using pure ion chromatograms, which is developed for metabolomics studies. KPIC2 can detect pure ions accurately, align PICs across samples, group PICs to annotate isotope and adduct PICs, fill missing peaks and pattern recognition. High-resolution mass spectrometers like TOF and Orbitrap are more suitable.

Authors:Hongchao Ji

KPIC_2.4.0.tar.gz
KPIC_2.4.0.zip(r-4.7-x86_64)KPIC_2.4.0.zip(r-4.7-arm64)KPIC_2.4.0.zip(r-4.6-x86_64)KPIC_2.4.0.zip(r-4.6-arm64)KPIC_2.4.0.zip(r-4.5-x86_64)
KPIC_2.4.0.tgz(r-4.6-x86_64)KPIC_2.4.0.tgz(r-4.6-arm64)KPIC_2.4.0.tgz(r-4.5-x86_64)KPIC_2.4.0.tgz(r-4.5-arm64)
KPIC_2.4.0.tar.gz(r-4.7-arm64)KPIC_2.4.0.tar.gz(r-4.7-x86_64)KPIC_2.4.0.tar.gz(r-4.6-arm64)KPIC_2.4.0.tar.gz(r-4.6-x86_64)
KPIC_2.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
KPIC/json (API)

# Install 'KPIC' in R:
install.packages('KPIC', repos = c('https://rickhelmus.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rickhelmus/kpic2/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

cpp

1.70 score 5 scripts 34 exports 113 dependencies

Last updated from:5f63805169. Checks:13 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64WARNING262
linux-devel-x86_64WARNING305
source / vignettesOK278
linux-release-arm64WARNING273
linux-release-x86_64WARNING282
macos-release-arm64WARNING318
macos-release-x86_64WARNING521
macos-oldrel-arm64WARNING249
macos-oldrel-x86_64WARNING492
windows-devel-arm64WARNING326
windows-devel-x86_64WARNING315
windows-release-arm64WARNING505
windows-release-x86_64WARNING265
windows-oldrel-x86_64WARNING256
wasm-releaseOK142

Exports:.PICfit.PICresolve.PICsplitanalyst.OPLSanalyst.RFfillPeaks.EIBPCgetDataMatrixgetMSgetPeaksgetPICgetPIC.kmeansgetPIPgetTICsgroupCombineLoadDataPICfitPICresolvePICsetPICset.alignPICset.fitPICset.getPeaksPICset.groupPICset.kmeansPICset.resolvePICset.splitPICsplitreadPICsviewAlignviewGroupsviewMSviewPICsviewPseudospecturmviewTICsWMPD

Dependencies:abindaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsbiocmakebslibcachemcalibrateCkmeans.1d.dpclicodetoolscommonmarkcpp11crayoncrosstalkcurldata.tabledbscanDelayedArraydigestdir.expirydplyrevaluatefarverfastmapfilelockfontawesomeforeachfsGAgenericsGenomicRangesggplot2ggrepelgluegtablehighrhtmltoolshtmlwidgetshttpuvhttrIRangesisobanditeratorsjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelimmamagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeMultiAssayExperimentMultiDataSetmzRncdf4opensslotelpillarpkgconfigplotlypromisesProtGenericspurrrqqmanR6randomForestrappdirsrbibutilsRColorBrewerRcppRcppArmadilloRdpackRhdf5librlangrmarkdownroplsS4ArraysS4VectorsS7sassscalesSeqinfoshinysourcetoolsSparseArraystatmodstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableXVectoryaml