Package: InterpretMSSpectrum 1.3.3
Jan Lisec
InterpretMSSpectrum: Interpreting High Resolution Mass Spectra
High resolution mass spectrometry yields often large data sets of spectra from compounds which are not present in available libraries. These spectra need to be annotated and interpreted.'InterpretMSSpectrum' provides a set of functions to perform such tasks for Electrospray-Ionization and Atmospheric-Pressure-Chemical-Ionization derived data in positive and negative ionization mode.
Authors:
InterpretMSSpectrum_1.3.3.tar.gz
InterpretMSSpectrum_1.3.3.zip(r-4.5)InterpretMSSpectrum_1.3.3.zip(r-4.4)InterpretMSSpectrum_1.3.3.zip(r-4.3)
InterpretMSSpectrum_1.3.3.tgz(r-4.5-any)InterpretMSSpectrum_1.3.3.tgz(r-4.4-any)InterpretMSSpectrum_1.3.3.tgz(r-4.3-any)
InterpretMSSpectrum_1.3.3.tar.gz(r-4.5-noble)InterpretMSSpectrum_1.3.3.tar.gz(r-4.4-noble)
InterpretMSSpectrum_1.3.3.tgz(r-4.4-emscripten)InterpretMSSpectrum_1.3.3.tgz(r-4.3-emscripten)
InterpretMSSpectrum.pdf |InterpretMSSpectrum.html✨
InterpretMSSpectrum/json (API)
| # Install 'InterpretMSSpectrum' in R: |
| install.packages('InterpretMSSpectrum', repos = c('https://rickhelmus.r-universe.dev', 'https://cloud.r-project.org')) |
- Adducts - Default adduct lists used by 'findMAIN'.
- OrbiMS1 - Orbitrap spectra
- apci_spectrum - APCI spectrum
- chemical_elements - List of chemical elements.
- esi_spectrum - ESI spectrum
- neutral_losses_APCI - A data table defining typical neutral losses in GC-APCI-MS for silylated compounds.
- neutral_losses_ESI - A data table defining neutral losses in LC-ESI-MS (positive mode).
- param.default - Default parameter list for 'InterpretMSSpectrum'.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 years agofrom:0731d92acc (on 1.3.3). Checks:8 OK. Indexed: no.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Jan 27 2025 |
| R-4.5-win | OK | Jan 27 2025 |
| R-4.5-mac | OK | Jan 27 2025 |
| R-4.5-linux | OK | Jan 27 2025 |
| R-4.4-win | OK | Jan 27 2025 |
| R-4.4-mac | OK | Jan 27 2025 |
| R-4.3-win | OK | Dec 28 2024 |
| R-4.3-mac | OK | Oct 29 2024 |
Exports:CountChemicalElementsfindMAINGenerateMetaboliteSQLiteDBGetGroupFactorIMS_parallelInterpretMSSpectrummScorePlausibleFormulaPlotSpecsendToMSFwriteMSF
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Default adduct lists used by 'findMAIN'. | Adducts |
| APCI spectrum | apci_spectrum |
| List of chemical elements. | chemical_elements |
| CountChemicalElements. | CountChemicalElements |
| ESI spectrum | esi_spectrum |
| findMAIN. | findMAIN |
| GenerateMetaboliteSQLiteDB. | GenerateMetaboliteSQLiteDB |
| GetGroupFactor. | GetGroupFactor |
| IMS_parallel. | IMS_parallel |
| Interpreting High-Res-MS spectra. | InterpretMSSpectrum |
| mScore. | mScore |
| A data table defining typical neutral losses in GC-APCI-MS for silylated compounds. | neutral_losses_APCI |
| A data table defining neutral losses in LC-ESI-MS (positive mode). | neutral_losses_ESI |
| Orbitrap spectra | OrbiMS1 |
| Default parameter list for 'InterpretMSSpectrum'. | param.default |
| Plot Mass Spectrum. | PlotSpec |
| Exporting spectra to MSFinder. | sendToMSF sendToMSF.default sendToMSF.findMAIN |
